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linux_environment_modules [2019/03/18 18:23]
ktm5j
linux_environment_modules [2020/03/09 13:09]
pgh5a
Line 12: Line 12:
  
 <​code>​ <​code>​
-ktm5j@applecake ​~ $ module avail+[pgh5a@portal04 ​~]$ module avail 
 +------------------------------- /​sw/​centos/​Modules/​systemModfiles ------------------------------------------------------------- 
 +slurm-client ​        ​slurm-client-testing 
 + 
 +--------------------------------- /​sw/​centos/​Modules/​modulefiles -------------------------------------------------------------- 
 +afl               ​cmake-3.10 ​       cudnn-7.3.1 ​      ​gdb-8.1 ​          ​libav ​            ​netdata ​          ​php7 ​             ruby 
 +altera_pro ​       cmake-3.15 ​       cudnn-7.5.0 ​      ​ghex ​             libtorch ​         nios2eds ​         php7.1.10 ​        ​ruby2.5.1 
 +anaconda3 ​        ​cs6620 ​           dmd               ​git ​              ​libtorch-1.3.1 ​   nvtop             ​python ​           sbt 
 +anaconda3-2019.10 cuda-toolkit ​     dmd-2.088.0 ​      ​gradle ​           lua               ​openmpi ​          ​python2 ​          ​scala 
 +antlr             ​cuda-toolkit-10 ​  ​doxygen ​          ​hashcat ​          ​lua-5.3.4 ​        ​openmpi2.1.5 ​     python2.7.15 ​     sqlite3 
 +atom              cuda-toolkit-10.1 eclipse ​          ​java ​             lxd               ​openmpi4.0.0 ​     python3 ​          ​storm 
 +boost             ​cuda-toolkit-8.0 ​ emacs             ​java11 ​           modelsim_ae ​      ​openmpi4.0.2 ​     python3.6.2 ​      svn 
 +boost-1.67.0 ​     cuda-toolkit-9.0 ​ fio               ​java8 ​            ​modelsim_ase ​     parallel ​         python3.8.0 ​      ​torch 
 +clang-llvm ​       cuda-toolkit-9.2 ​ gcc               ​java8u161 ​        ​nano ​             perl              qsys              verilator 
 +clang-llvm-6.0.0 ​ cudnn             ​gcc-5.5.0 ​        ​java9 ​            ​nccl ​             perl-5.26 ​        ​quartus 
 +clang-llvm-7.1.0 ​ cudnn-7.0.5 ​      ​gcc-6.3.0 ​        ​java9.0.4 ​        ​nccl-10.0 ​        ​perl-6 ​           R 
 +cmake             ​cudnn-7.1.1 ​      ​gcc-7.1.0 ​        ​lammps ​           nccl-9.2 ​         php               ​rstudio 
 + 
 +------------------------------- /​sw/​linux-any/​Modules/​modulefiles ------------------------------------------------------------- 
 +ant               ​cplex ​            ​cplex-opl ​        ​dmd-2.088.0 ​      ​ripgrep ​          ​scons-3.0.1 ​      ​vscode 
 +antlr             ​cplex-concert ​    ​cplex-studio-all ​ go                sbt               ​tmux 
 +apktool ​          ​cplex-cpoptimizer dmd               ​matlab ​           scons             ​tmux-2.7
  
------------------------- /​sw/​centos/​Modules/​modulefiles ------------------------ 
-altera_pro ​      ​modelsim_ae ​     php7             ​python3.6.2 
-cuda-toolkit-9.0 modelsim_ase ​    ​php7.1.10 ​       qsys 
-emacs            nios2eds ​        ​python ​          ​quartus 
-matlab ​          ​php ​             python3 
 </​code>​ </​code>​
  
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 <​code>​ <​code>​
-ktm5j@applecake ​~ $ module load python3 ​             # Load the module for use in your current session +pgh5a@portal04 ​~ $ module load python3 ​             # Load the module for use in your current session 
-ktm5j@applecake ​~ $ which python+pgh5a@portal04 ​~ $ which python
 /​sw/​centos/​python/​3.6.2/​bin/​python /​sw/​centos/​python/​3.6.2/​bin/​python
-ktm5j@applecake ​~ $ python ​                          # When you run `python` you get the version that has been loaded+pgh5a@portal04 ​~ $ python ​                          # When you run `python` you get the version that has been loaded
 Python 3.6.2 (default, Oct  6 2017, 13:​03:​05) ​ Python 3.6.2 (default, Oct  6 2017, 13:​03:​05) ​
 [GCC 4.8.5 20150623 (Red Hat 4.8.5-16)] on linux [GCC 4.8.5 20150623 (Red Hat 4.8.5-16)] on linux
Line 37: Line 53:
  
 <​code>​ <​code>​
-ktm5j@applecake ​~ $ module load matlab +pgh5a@portal ​~ $ module load matlab 
-ktm5j@applecake ​~ $ module load php +pgh5a@portal ​~ $ module load php 
-ktm5j@applecake ​~ $ module list+pgh5a@portal ​~ $ module list
 Currently Loaded Modulefiles:​ Currently Loaded Modulefiles:​
   1) matlab ​   2) python3 ​  3) php   1) matlab ​   2) python3 ​  3) php
Line 47: Line 63:
  
 <​code>​ <​code>​
-ktm5j@applecake ​~ $ module display python+pgh5a@portal ​~ $ module display python
 ------------------------------------------------------------------- -------------------------------------------------------------------
 /​sw/​centos/​Modules/​modulefiles/​python:​ /​sw/​centos/​Modules/​modulefiles/​python:​
Line 57: Line 73:
 prepend-path MANPATH /​sw/​centos/​python/​current/​share/​man ​ prepend-path MANPATH /​sw/​centos/​python/​current/​share/​man ​
 ------------------------------------------------------------------- -------------------------------------------------------------------
-ktm5j@applecake ​~ $ echo $LD_LIBRARY_PATH ​+pgh5a@portal ​~ $ echo $LD_LIBRARY_PATH ​
 /​sw/​centos/​python/​3.6.2/​lib /​sw/​centos/​python/​3.6.2/​lib
 </​code>​ </​code>​
Line 64: Line 80:
  
 <​code>​ <​code>​
-ktm5j@applecake ​~ $ module switch python3 python2 +pgh5a@portal ​~ $ module switch python3 python2 
-ktm5j@applecake ​~ $ module unload php+pgh5a@portal ​~ $ module unload php
 </​code>​ </​code>​
  
Line 74: Line 90:
 If you write shell scripts or slurm batch files that make use of these software packages, remember that you must still load modules from inside of your script. ​ For example, your script must contain the line ''​%%module load python3%%''​ before you can use python from inside of your script. If you write shell scripts or slurm batch files that make use of these software packages, remember that you must still load modules from inside of your script. ​ For example, your script must contain the line ''​%%module load python3%%''​ before you can use python from inside of your script.
  
-**Note:** If you are having trouble loading ​modules from inside SLURM, ​try including the following line in your script **before** loading any modules:+=== Initialize Modules System === 
 + 
 +To make modules ​work from inside SLURM or scriptsyou must including the following line in your script **before** loading any modules:
  
 <code bash> <code bash>
 source /​etc/​profile.d/​modules.sh source /​etc/​profile.d/​modules.sh
 </​code>​ </​code>​
  • linux_environment_modules.txt
  • Last modified: 2020/06/13 00:39
  • by pgh5a